<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "https://jats.nlm.nih.gov/nlm-dtd/publishing/3.0/journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article"><?xmltex \bartext{Research article}?>
  <front>
    <journal-meta><journal-id journal-id-type="publisher">AR</journal-id><journal-title-group>
    <journal-title>Aerosol Research</journal-title>
    <abbrev-journal-title abbrev-type="publisher">AR</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Aerosol Research</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">2940-3391</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/ar-2-123-2024</article-id><title-group><article-title>A cluster-of-functional-groups approach for studying organic enhanced atmospheric cluster formation</article-title><alt-title>Organic enhanced atmospheric cluster formation</alt-title>
      </title-group><?xmltex \runningtitle{Organic enhanced atmospheric cluster formation}?><?xmltex \runningauthor{A. N. Pedersen et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no">
          <name><surname>Pedersen</surname><given-names>Astrid Nørskov</given-names></name>
          
        <ext-link>https://orcid.org/0009-0006-2673-635X</ext-link></contrib>
        <contrib contrib-type="author" corresp="no">
          <name><surname>Knattrup</surname><given-names>Yosef</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-3549-7494</ext-link></contrib>
        <contrib contrib-type="author" corresp="yes">
          <name><surname>Elm</surname><given-names>Jonas</given-names></name>
          <email>jelm@chem.au.dk</email>
        <ext-link>https://orcid.org/0000-0003-3736-4329</ext-link></contrib>
        <aff id="aff1"><institution>Department of Chemistry, Aarhus University, Langelandsgade 140, 8000 Aarhus C, Denmark</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Jonas Elm (jelm@chem.au.dk)</corresp></author-notes><pub-date><day>4</day><month>June</month><year>2024</year></pub-date>
      
      <volume>2</volume>
      <issue>1</issue>
      <fpage>123</fpage><lpage>134</lpage>
      <history>
        <date date-type="received"><day>18</day><month>February</month><year>2024</year></date>
           <date date-type="rev-request"><day>22</day><month>February</month><year>2024</year></date>
           <date date-type="rev-recd"><day>6</day><month>April</month><year>2024</year></date>
           <date date-type="accepted"><day>24</day><month>May</month><year>2024</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 Astrid Nørskov Pedersen et al.</copyright-statement>
        <copyright-year>2024</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024.html">This article is available from https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024.html</self-uri><self-uri xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024.pdf">The full text article is available as a PDF file from https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d1e96">The role of organic compounds in atmospheric new particle formation is difficult to disentangle due to the myriad of potentially important oxygenated organic molecules (OOMs) present in the atmosphere. Using state-of-the-art quantum chemical methods, we here employ a novel approach, denoted the “cluster-of-functional-groups” approach, for studying the involvement of OOMs in atmospheric cluster formation. Instead of the usual “trial-and-error” approach of testing the ability of experimentally identified OOMs to form stable clusters with other nucleation precursors, we here study which, and how many, intermolecular interactions are required in a given OOM to form stable clusters. In this manner we can reverse engineer the elusive structure of OOM candidates that might be involved in organic enhanced atmospheric cluster formation.</p>

      <p id="d1e99">We calculated the binding free energies of all combinations of donor and acceptor organic functional groups to investigate which functional groups most preferentially bind with each other and with other nucleation precursors such as sulfuric acid and bases (ammonia, methyl-, dimethyl- and trimethylamine). We find that multiple carboxyl groups lead to substantially more stable clusters compared to all other combinations of functional groups. Employing cluster dynamics simulations, we investigate how a hypothetically OOM composed of multiple carboxyl groups can stabilize sulfuric acid–base clusters and provide recommendations for potential atmospheric multi-carboxylic acid tracer compounds that should be explicitly studied in the future.</p>

      <p id="d1e102">The presented “cluster-of-functional-groups” approach is generally applicable and can be employed in many other applications, such as ion-induced nucleation and potentially in elucidating the structural patterns in molecules that facilitate ice nucleation.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>Danmarks Frie Forskningsfond</funding-source>
<award-id>9064-00001B</award-id>
</award-group>
<award-group id="gs2">
<funding-source>Danmarks Grundforskningsfond</funding-source>
<award-id>DNRF172</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e114">Secondary organic aerosols (SOAs) constitute a major fraction of organic matter in the atmosphere <xref ref-type="bibr" rid="bib1.bibx33" id="paren.1"/> and influence both human health <xref ref-type="bibr" rid="bib1.bibx61" id="paren.2"/> and global climate <xref ref-type="bibr" rid="bib1.bibx6" id="paren.3"/>. The term SOA formation usually comprises both the initial aerosol nucleation and the subsequent growth of existing aerosol particles via vapor uptake. However, while oxygenated organic molecules (OOMs) are widely accepted as being important for aerosol growth, it remain ambiguous whether OOMs are important for aerosol nucleation in the atmosphere <xref ref-type="bibr" rid="bib1.bibx39" id="paren.4"/>.</p>
      <?pagebreak page124?><p id="d1e129">The onset of aerosol nucleation is governed by the formation of stable atmospheric molecular clusters <xref ref-type="bibr" rid="bib1.bibx45" id="paren.5"/>. Sulfuric acid <xref ref-type="bibr" rid="bib1.bibx70" id="paren.6"/> and atmospheric bases such as ammonia (AM) <xref ref-type="bibr" rid="bib1.bibx37" id="paren.7"/> and amines <xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx31 bib1.bibx25" id="paren.8"/> (methylamine (MA), dimethylamine (DMA) and trimethylamine (TMA)) are important species for nucleation both over land and sea. In addition, iodine species have been shown to contribute to nucleation at coastal and marine environments <xref ref-type="bibr" rid="bib1.bibx3 bib1.bibx5 bib1.bibx28 bib1.bibx29" id="paren.9"/>. The global modeling study by <xref ref-type="bibr" rid="bib1.bibx10" id="text.10"/> indicated that almost all nucleation occurring in the atmosphere involves sulfuric acid coupled with either ammonia and/or organics. However, the exact role of organics in aerosol nucleation remains elusive. Pure organic ion-induced nucleation has been reported both at the CLOUD chamber <xref ref-type="bibr" rid="bib1.bibx38" id="paren.11"/> and in the field <xref ref-type="bibr" rid="bib1.bibx66" id="paren.12"/>. While some early work has inferred that organics play a role in multicomponent cluster formation <xref ref-type="bibr" rid="bib1.bibx78 bib1.bibx50 bib1.bibx68 bib1.bibx62" id="paren.13"/>, it remains unknown whether this is also true for multicomponent SA–base–OOM nucleation or whether it proceeds via two isolated pathways (one for SA–base and one for pure OOMs). Both experiments <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx39" id="paren.14"/> and quantum chemical calculations <xref ref-type="bibr" rid="bib1.bibx14" id="paren.15"/> allude to a decoupled mechanism, but this has not yet been definitively confirmed.</p>
      <p id="d1e166">The puzzle of the role of organics in aerosol nucleation originates from the fact that there exists a myriad of OOMs in the atmosphere. Volatile organic compounds (VOCs) are rapidly transformed into less volatile species in the air due to oxidation reactions with either OH, NO<inline-formula><mml:math id="M1" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, or O<inline-formula><mml:math id="M2" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>, making it challenging to disentangle which OOMs are important for nucleation and which are important for SOA growth. Identification of OOMs is usually performed with mass spectrometer techniques such as chemical ionization atmospheric pressure interface time of flight (CI-APi-TOF) <xref ref-type="bibr" rid="bib1.bibx34" id="paren.16"/>. For instance, the seminal work by <xref ref-type="bibr" rid="bib1.bibx11" id="text.17"/> measured the chemical composition of OOM monomers (C<inline-formula><mml:math id="M3" display="inline"><mml:msub><mml:mi/><mml:mtext>10</mml:mtext></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M4" display="inline"><mml:msub><mml:mi/><mml:mtext>14-16</mml:mtext></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M5" display="inline"><mml:msub><mml:mi/><mml:mtext>7-11</mml:mtext></mml:msub></mml:math></inline-formula>) and OOM covalently bound dimers (C<inline-formula><mml:math id="M6" display="inline"><mml:msub><mml:mi/><mml:mtext>19-20</mml:mtext></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M7" display="inline"><mml:msub><mml:mi/><mml:mtext>28-32</mml:mtext></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M8" display="inline"><mml:msub><mml:mi/><mml:mtext>10-18</mml:mtext></mml:msub></mml:math></inline-formula>) from <inline-formula><mml:math id="M9" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene (C<inline-formula><mml:math id="M10" display="inline"><mml:msub><mml:mi/><mml:mtext>10</mml:mtext></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M11" display="inline"><mml:msub><mml:mi/><mml:mtext>16</mml:mtext></mml:msub></mml:math></inline-formula>) oxidation. While this gives important information about the chemical composition of the OOMs, it yields no information about the exact functional groups or their arrangement in the molecules. Quantum chemical (QC) calculations can be applied to yield the cluster structures and in conjugation with cluster dynamics modeling can elucidate the role of specific OOMs in nucleation. However, this requires that the given OOM structure is known. This has led to an overabundance of QC studies, including work by our group, that investigate the binding affinity of different experimentally identified OOMs to themselves and other nucleation precursors. We recently reviewed the entire QC literature on the role of organics in cluster formation, and unfortunately, not a single OOM has definitively been proven to participate in nucleation in the planetary boundary layer <xref ref-type="bibr" rid="bib1.bibx23" id="paren.18"/>. The lack of progress could be ascribed to the fact that previous work has been looking at the wrong compounds. All studies have been performed on the organic monomers, while recent evidence from the CLOUD chamber has shown that it is in fact the covalently bound organic dimers, which have ultra low volatilities (ULVOCs) <xref ref-type="bibr" rid="bib1.bibx69" id="paren.19"/>, that drive nucleation <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx8" id="paren.20"/>. We will hereon refer to these dimers as accretion products to clearly distinct them from dimer clusters. Studying large C<inline-formula><mml:math id="M12" display="inline"><mml:msub><mml:mi/><mml:mtext>19-20</mml:mtext></mml:msub></mml:math></inline-formula>H<inline-formula><mml:math id="M13" display="inline"><mml:msub><mml:mi/><mml:mtext>28-32</mml:mtext></mml:msub></mml:math></inline-formula>O<inline-formula><mml:math id="M14" display="inline"><mml:msub><mml:mi/><mml:mtext>10-18</mml:mtext></mml:msub></mml:math></inline-formula> OOM accretion products such as those from <inline-formula><mml:math id="M15" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene oxidation is challenging using QC methods, and to date not a single study exists. This is caused by the fact that QC methods scale steeply with system size. In addition, larger, more flexible molecules can exist in numerous conformations, which rapidly increase number of calculations required to identify the global minimum cluster structures.</p>
      <p id="d1e318">Using state-of-the-art quantum chemical methods, we here employ a new approach, denoted the “cluster-of-functional-groups” approach <xref ref-type="bibr" rid="bib1.bibx23" id="paren.21"/>, for studying the involvement of OOMs in atmospheric cluster formation. Instead of the usual “trial-and-error” approach of testing the ability of identified OOMs to form stable clusters with themselves or other nucleation precursors, we here study exactly which and how many intermolecular interactions (in the form of functional groups) are required in a given OOM to form stable clusters. This allows us to reverse engineer the potential structure of OOMs involved in organic enhanced atmospheric cluster formation. We explicitly study all possible donors (alcohol, peroxide) and acceptors (ether, epoxide, aldehyde, ketone, acid anhydride and ester), as well as carboxylic acids. Based on the functional groups that bind strongest, we extend the analysis to study the cluster dynamics of a hypothetical OOM binding to <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mtext>base</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> clusters, where the bases are AM, MA, DMA and TMA.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Methods</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Computational details</title>
      <p id="d1e373">The semi-empirical GFN1-xTB <xref ref-type="bibr" rid="bib1.bibx27" id="paren.22"/> energy calculations and geometry optimization were calculated with the xtb 6.4.0 program <xref ref-type="bibr" rid="bib1.bibx4" id="paren.23"/>. Gaussian16, version B.01 <xref ref-type="bibr" rid="bib1.bibx24" id="paren.24"/>, was used for the density functional theory (DFT) calculations with default convergence criteria. The <inline-formula><mml:math id="M17" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D functional <xref ref-type="bibr" rid="bib1.bibx7" id="paren.25"/> with the 6-31++G(d,p) basis set was chosen for geometry optimization and vibrational frequency calculations based on its performance in numerous benchmarks <xref ref-type="bibr" rid="bib1.bibx20 bib1.bibx52 bib1.bibx18 bib1.bibx67 bib1.bibx32" id="paren.26"/>. Given that some vibrational frequencies were low, the quasi-harmonic approximation, as recommended by <xref ref-type="bibr" rid="bib1.bibx26" id="text.27"/>, was used to treat vibrational frequencies below <inline-formula><mml:math id="M18" display="inline"><mml:mn mathvariant="normal">100</mml:mn></mml:math></inline-formula> cm<inline-formula><mml:math id="M19" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> as free rotors. ORCA 5.0.4 <xref ref-type="bibr" rid="bib1.bibx54 bib1.bibx55 bib1.bibx57 bib1.bibx56" id="paren.28"/> was used to calculate single-point energy corrections using Domain Local Pair Natural Orbital, DLPNO–CCSD(T<inline-formula><mml:math id="M20" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>) <xref ref-type="bibr" rid="bib1.bibx63 bib1.bibx64" id="paren.29"/>, with the aug-cc-pVTZ basis set, using the TightSCF convergence criteria and the NormalPNO setting <xref ref-type="bibr" rid="bib1.bibx48" id="paren.30"/>. The workflow and subsequent data processing was automated using the JKCS program <xref ref-type="bibr" rid="bib1.bibx44" id="paren.31"/>. All data have been added to the Atmospheric Cluster DataBase (ACDB) <xref ref-type="bibr" rid="bib1.bibx13" id="paren.32"/>. The atmospheric cluster dynamics were simulated with the Atmospheric Cluster Dynamics Code (ACDC) <xref ref-type="bibr" rid="bib1.bibx49" id="paren.33"/> using a modified version of the code given in the online repository by Tinja Olenius <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx65" id="paren.34"/> available in the JKCS suite. The simulations were done at 278.15 K with a constant coagulation sink of <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1.6</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> s<inline-formula><mml:math id="M22" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, matching typical sink values <xref ref-type="bibr" rid="bib1.bibx9 bib1.bibx41" id="paren.35"/>. The clusters with a<?pagebreak page125?> single sulfuric acid monomer were counted towards the total sulfuric acid concentration.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Configurational sampling</title>
      <p id="d1e496">For the configurational sampling procedure, a funnel-type approach was employed <xref ref-type="bibr" rid="bib1.bibx73 bib1.bibx58 bib1.bibx43" id="paren.36"/>, where the level of theory is increased in each step as the number of candidate cluster structures is decreased. The workflow can be described as follows:
            <disp-formula id="Ch1.Ex1"><mml:math id="M23" display="block"><mml:mtable rowspacing="0.2ex" class="split" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mtext>ABCluster</mml:mtext></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>→</mml:mo><mml:msup><mml:mtext>GFN1-xTB</mml:mtext><mml:mtext>OPT</mml:mtext></mml:msup><mml:mo>→</mml:mo><mml:mtext>ArbAlign</mml:mtext></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>→</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:msup><mml:mtext>B97X-D</mml:mtext><mml:mtext>OPT+FREQ</mml:mtext></mml:msup><mml:mo>→</mml:mo><mml:msup><mml:mtext>DLPNO</mml:mtext><mml:mtext>SP</mml:mtext></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          ABCluster <xref ref-type="bibr" rid="bib1.bibx76 bib1.bibx77" id="paren.37"/> was used to generate a large pool of cluster structures with the CHARMM force field. Settings as recommended by <xref ref-type="bibr" rid="bib1.bibx43" id="text.38"/> with population size, <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:mi mathvariant="normal">SN</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3000</mml:mn></mml:mrow></mml:math></inline-formula>, maximum generations,  <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mtext>max</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula>, and number of scout bees, <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:msub><mml:mi>g</mml:mi><mml:mtext>limit</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:math></inline-formula> were used. We employed neutral, anionic and cationic monomers in all combinations, leading to overall neutral clusters, and saved 1000 local minima for each combination. All local minima were optimized at the GFN1-xTB level. ArbAlign <xref ref-type="bibr" rid="bib1.bibx72" id="paren.39"/> was used to filter out identical clusters, based on root-mean-square deviation (RMSD) values. Based on previous studies on atmospheric clusters <xref ref-type="bibr" rid="bib1.bibx36 bib1.bibx35" id="paren.40"/>, an RMSD cutoff of 0.38 Å  was chosen. As a large number of structures remained after ArbAlign, only the 100 cluster structures with the lowest electronic energy were selected for further optimization at the <inline-formula><mml:math id="M27" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory. The five structures with the lowest free energy were then selected for calculation of single-point energies at the DLPNO-CCSD(T<inline-formula><mml:math id="M28" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ level.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>The “cluster-of-functional-groups” approach</title>
      <p id="d1e627">Small organic molecules were chosen to represent the functional groups that act as hydrogen bond donors (alcohol <inline-formula><mml:math id="M29" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OH</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and peroxide <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">OOH</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>), as well as functional groups that act as hydrogen bond acceptors (ether <inline-formula><mml:math id="M31" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">OCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, epoxide <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, aldehyde <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">CHO</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, ketone <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:msub><mml:mi mathvariant="normal">COCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, acid anhydride <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="normal">C</mml:mi><mml:mo>(</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="normal">O</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">OC</mml:mi><mml:mo>(</mml:mo><mml:mo>=</mml:mo><mml:mi mathvariant="normal">O</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi mathvariant="normal">CH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and ester <inline-formula><mml:math id="M36" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="normal">COOCH</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>). Besides these groups, carboxylic acid, <inline-formula><mml:math id="M37" display="inline"><mml:mrow class="chem"><mml:mo>(</mml:mo><mml:mi mathvariant="normal">HCOOH</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which is both an acceptor and a donor, was also included. The studied functional groups were included in the funneling approach in order to identify the global minimum cluster structures. In this manner the functional groups should orient in the most favorable positions and can be viewed as ideal “contact points” for assembling the molecular backbone afterwards. Hence, the “cluster-of-functional-groups” approach should be viewed as a single proxy OOM. The strength of this approach is that we do not need to explicitly consider the origin of the OOM, i.e. anthropogenic (aromatics) or biogenic (isoprene/terpenes), or whether it is a monomer or an accretion product as the approach will inherently identify the structural patterns that are important directly based on their ability to participate in cluster formation <xref ref-type="bibr" rid="bib1.bibx23" id="paren.41"/>. However, if the functional groups are optimally oriented far from each other, it could allude to the fact that the potential compound is an accretion product.</p>
      <p id="d1e815">We note the caveat that the “cluster-of-functional-groups” approach assumes that the binding free energies of the individual groups are additive. This might not necessarily be the case for realistic atmospheric OOMs, where several effects potentially make the free energies deviate from additivity, and there can be expected some degree of cancellation of errors. For instance, the enthalpy contribution is expected to be more or less additive given that there are no intramolecular hydrogen bonds in the OOM. In addition, it is unlikely that the multiple moieties of any realistic OOM can simultaneously reach the ideal contact points without introducing some strain in the backbone, which will also lead to a higher enthalpy. The entropy contribution will most likely not be additive as a major contribution comes from the loss of translational and rotational degrees of freedom, i.e., the conversion into lower-entropy vibrational degrees of freedom. For each clustering functional group 6 high-entropy degrees of freedom are lost, while only a total of 6 high-entropy degrees of freedom are lost in the OOM. Despite these deficiencies, the “cluster-of-functional-groups” approach can still be employed for screening purposes and to yield some indication of which combinations of functional groups might potentially be important in atmospheric cluster formation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e820">The binding free energy of all organic–organic interactions between all combinations of hydrogen bond donor and acceptor, calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M38" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ //<inline-formula><mml:math id="M39" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. CA is short for carboxylic acid.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f01.png"/>

        </fig>

<?xmltex \hack{\newpage}?><?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e861">The binding free energy of clusters with one SA and one organic functional group, as well as with one SA fully saturated by organic functional groups, calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M41" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M42" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M43" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm.</p></caption>
          <?xmltex \igopts{width=230.467323pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f02.png"/>

        </fig>

</sec>
<?pagebreak page126?><sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Atmospheric cluster dynamics</title>
      <p id="d1e906">To study the time development of molecular cluster distributions, the free energy is used to solve the birth–death equations with ACDC <xref ref-type="bibr" rid="bib1.bibx49" id="paren.42"/>. The birth–death equations describe how clusters are destroyed and created by condensation and evaporation and are given as the change in concentration of cluster <inline-formula><mml:math id="M44" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>,
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M45" display="block"><mml:mtable class="split" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mtext>d</mml:mtext><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mtext>d</mml:mtext><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>&lt;</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:munder><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mrow><mml:mi>j</mml:mi><mml:mo>,</mml:mo><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mi>j</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>-</mml:mo><mml:mi>j</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>j</mml:mi></mml:munder><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mi>j</mml:mi><mml:mo>)</mml:mo><mml:mo>→</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mi>j</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd/><mml:mtd><mml:mrow><mml:mo>-</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>j</mml:mi></mml:munder><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>j</mml:mi><mml:mo>&lt;</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:munder><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>→</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>Q</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>
          Here, <inline-formula><mml:math id="M46" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula> is another cluster in the system, <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the collision coefficient between cluster <inline-formula><mml:math id="M48" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M49" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>, and <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>→</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the evaporation coefficient of cluster <inline-formula><mml:math id="M51" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> into a smaller cluster, of which one is cluster <inline-formula><mml:math id="M52" display="inline"><mml:mi>j</mml:mi></mml:math></inline-formula>. <inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi>Q</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> covers outside sources of <inline-formula><mml:math id="M54" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>i</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> other possible loss mechanisms for <inline-formula><mml:math id="M56" display="inline"><mml:mi>i</mml:mi></mml:math></inline-formula>. The collision coefficient is calculated using kinetic gas theory and the evaporation coefficient via mass balance based on calculated free energy,
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M57" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">γ</mml:mi><mml:mrow><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mi>j</mml:mi><mml:mo>)</mml:mo><mml:mo>→</mml:mo><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:msub><mml:mi>c</mml:mi><mml:mtext>ref</mml:mtext></mml:msub><mml:mtext>exp</mml:mtext><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>G</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mo>+</mml:mo><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>G</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:msub><mml:mi>G</mml:mi><mml:mi>j</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mi>T</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mtext>ref</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the monomer concentration of the vapor used to calculate the free energies. The birth–death equations are generated by checking all possible cluster configurations and examining which evaporations and collisions are able to destroy or create a given cluster <xref ref-type="bibr" rid="bib1.bibx49" id="paren.43"/>. As it is not possible to explicitly simulate the entire cluster size range, a user-specific size limit has to be chosen where the clusters are considered stable against evaporation and are counted towards the formation rate. We will refer to these clusters as “outgrowing”. For our systems, we chose the clusters with one additional acid compared to the cluster sizes we have data for [(SA)<inline-formula><mml:math id="M59" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M60" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>, (SA)<inline-formula><mml:math id="M61" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(OOM)<inline-formula><mml:math id="M62" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M63" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> and (SA)<inline-formula><mml:math id="M64" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula>(OOM)<inline-formula><mml:math id="M65" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M66" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>]. We exclude outgrowing collisions with bases as clusters composed of more bases than acids are usually not stable. The outgrowing clusters containing OOMs have one more molecule present compared to the pathway without OOM. This will slightly underestimate the contribution of OOM to the relative simulated <inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mtext>potential</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> rates. These outgrowing cluster sizes are still quite small and therefore artificially stabilize the systems as the critical cluster size is not necessarily captured well. To distinguish the calculated rates from actual nucleation rates, we will refer to the rates as “cluster formation potentials” (<inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mi mathvariant="normal">potential</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>). These rates illustrate the potential of the cluster to grow to larger sizes and correspond to an upper-bound on the formation rate. We refer to the “Clusteromics I” paper <xref ref-type="bibr" rid="bib1.bibx15" id="paren.44"/> for additional information on “cluster formation potentials”.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e1415">The binding free energy of the <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>base</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>organic</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> clusters, calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M70" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M71" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M72" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. Carboxylic acid, the base and sulfuric acid have been omitted in the labels for readability. REF is the reference (SA)<inline-formula><mml:math id="M73" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M74" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster without organics present.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f03.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results and discussion</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Pure organic clusters</title>
      <p id="d1e1520">Initially, pure organic clusters were studied containing every possible donor–acceptor combination. This led to a total of 21 dimer cluster structures. The calculated free energies, at the DLPNO-CCSD(T<inline-formula><mml:math id="M75" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M76" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory, are given in Fig. <xref ref-type="fig" rid="Ch1.F1"/>. The calculations are performed at 298.15 K and 1 atm.</p>
      <?pagebreak page127?><p id="d1e1541">All the dimer clusters have a positive change in free energy, except for the dimer cluster with two carboxylic acid (CA) groups that has a <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.23</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M78" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. This value is in excellent agreement with the experimental value of <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.46</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M80" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the formic acid dimer cluster given by  <xref ref-type="bibr" rid="bib1.bibx74" id="text.45"/>, at <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:mn mathvariant="normal">296</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>K</mml:mtext></mml:mrow></mml:math></inline-formula>. However, this value corresponds to a high evaporation rate of the formic acid dimer. Thus, cluster formation involving only organic molecules is unlikely at 298.15 K and 1 atm, unless the molecule contains multiple carboxylic acid groups. In all cases the inclusion of a carboxyl group lowers the binding free energy considerably compared to the other functional groups. Hence, it is likely that other compounds besides organics are needed for forming the initial stable clusters.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e1611">The binding free energy of the (SA)<inline-formula><mml:math id="M82" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M83" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M84" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(organic)<inline-formula><mml:math id="M85" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters, calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M86" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M87" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M88" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. CA is short for carboxylic acid. The base and sulfuric acid have been omitted in the labels for readability. REF is the reference (SA)<inline-formula><mml:math id="M89" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M90" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster without organics present.</p></caption>
          <?xmltex \igopts{width=233.312598pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e1706">The (SA)<inline-formula><mml:math id="M91" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M92" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(acid anhydride)<inline-formula><mml:math id="M93" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M94" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> and (SA)<inline-formula><mml:math id="M95" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M96" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M97" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cluster geometries lowest in free energy. Calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M99" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. White – hydrogen, brown – carbon, red – oxygen, yellow – sulfur, blue – nitrogen. CA is short for carboxylic acid.</p></caption>
          <?xmltex \igopts{width=239.00315pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>SA–organic clusters</title>
      <p id="d1e1815">As sulfuric acid is known to be essential for new particle formation, dimer clusters involving all the different organic functional groups and SA are studied. We studied the (SA)<inline-formula><mml:math id="M101" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(organic)<inline-formula><mml:math id="M102" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> dimer clusters where only a single organic functional group is present, as well as the (SA)<inline-formula><mml:math id="M103" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M104" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(organic)<inline-formula><mml:math id="M105" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters that have been fully saturated by organic functional groups, meaning all donor and acceptor groups in the SA molecule are hydrogen-bonded. This led to a total of 46 clusters studied. The fully saturated SA clusters all include at least one carboxylic acid group as well as two other identical organic groups, except for the case where there are two carboxylic acid groups in total as this fully saturates the SA molecule. The calculated free energies (at 298.15 K and 1 atm) are shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/>.</p>
      <p id="d1e1866">As expected, including SA decreases the free energy for all the dimer clusters when compared to the pure organic dimer clusters. Generally, saturating the SA molecule with organic functional groups also results in a cluster lower in free energy. However, in cases where there are added two hydrogen bond donors to the (SA)<inline-formula><mml:math id="M106" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M107" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster, the addition of the second functional group leads to an increase in the binding free energy. For instance, this is the case for the clusters containing either two esters and two epoxides.</p>
      <p id="d1e1887">For the dimer clusters, <inline-formula><mml:math id="M108" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the most stable with <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5.06</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M110" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, while for the clusters with a fully saturated SA, it is <inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, with <inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9.51</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M113" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, indicating a trend of carboxylic acid being the most stabilizing functional group. This finding is consistent with the previous study by <xref ref-type="bibr" rid="bib1.bibx21" id="text.46"/>. It should be noted that the <inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>alcohol</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cluster has a binding free energy very close to that of the <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cluster, with a value of <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8.09</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M117" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. This suggests that multiple alcohol groups could also be important for cluster formation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e2086">The (SA)<inline-formula><mml:math id="M118" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(alcohol/aldehyde/peroxide)<inline-formula><mml:math id="M120" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M121" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster geometries lowest in free energy. Calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M122" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M123" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. White – hydrogen, brown – carbon, red – oxygen, yellow – sulfur, blue – nitrogen. CA is short for carboxylic acid.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f06.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><?xmltex \opttitle{(SA)${}_{1}$(base)${}_{1}$--organic clusters}?><title>(SA)<inline-formula><mml:math id="M125" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M126" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>–organic clusters</title>
      <p id="d1e2187">Next, bases are added to the clusters, to gauge its effect on the cluster stability. Initially, simple trimer clusters involving one organic functional group, one SA and one base (either AM, MA, DMA or TMA) are studied. The calculated binding free energies of these clusters, at 298.15 K and 1 atm, are presented in Fig. <xref ref-type="fig" rid="Ch1.F3"/>.</p>
      <p id="d1e2192">In all cases the (SA)<inline-formula><mml:math id="M127" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M128" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(organic)<inline-formula><mml:math id="M129" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters are lower in free energy compared to the (SA)<inline-formula><mml:math id="M130" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M131" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters. Hence, the addition of organics is thermodynamically favorable. For instance, the addition of a carboxylic acid group to the (SA)<inline-formula><mml:math id="M132" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M133" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> leads to a lowering of the free energy by <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4.09</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7.80</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8.09</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4.95</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M138" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for AM, MA, DMA and TMA, respectively.</p>
      <?pagebreak page128?><p id="d1e2312">Generally, the cluster binding free energies follow the basicity of the base with the following trend: DMA <inline-formula><mml:math id="M139" display="inline"><mml:mo>≃</mml:mo></mml:math></inline-formula> TMA <inline-formula><mml:math id="M140" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> MA <inline-formula><mml:math id="M141" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> AM. This is consistent with previous work, where it has been shown both theoretically <xref ref-type="bibr" rid="bib1.bibx46" id="paren.47"/> and experimentally <xref ref-type="bibr" rid="bib1.bibx31 bib1.bibx25 bib1.bibx1" id="paren.48"/> that amines are much more effective in driving new particle formation with SA than AM is, even when accounting for the large difference in atmospheric mixing ratios. The ordering of DMA and TMA depends slightly on the system, with DMA dominantly leading to the most stable clusters. In particular, the <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>DMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>TMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>DMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>acid anhydride</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> clusters have the lowest free energies, with <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">19.42</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">17.77</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18.46</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M149" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. Carboxylic acid groups are again found to form the most favorable interactions, with the cluster with acid anhydride only being about  1 kcal mol<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> less stable.</p>
      <p id="d1e2508">To further explore which functional groups that could yield stable clusters, we added one more organic functional group to the (SA)<inline-formula><mml:math id="M151" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters. As carboxylic acid has been prevalent in forming the most stable clusters in the previous sections, we added the constraint that one of the organics should be a carboxylic acid forming the (SA)<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M154" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M155" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(organic)<inline-formula><mml:math id="M156" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters. The calculated binding free energies (at 298.15 K and  1 atm) are given in Fig. <xref ref-type="fig" rid="Ch1.F4"/>.</p>
      <p id="d1e2568">The addition of one more organic functional group has a stabilizing effect on all the clusters. The cluster with two carboxylic acids is found to be lowest in free energy, with <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">23.96</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the (SA)<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M160" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M161" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> cluster. However, the cluster that contains an acid anhydride is also very close in free energy, with <inline-formula><mml:math id="M162" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">23.79</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M163" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The cluster structures can be seen in Fig. <xref ref-type="fig" rid="Ch1.F5"/>, calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M164" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M165" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory. In both cases the organics can be seen to interact both with SA and the DMA molecules.</p>
      <p id="d1e2673">Furthermore, the (SA)<inline-formula><mml:math id="M166" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M167" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(alcohol)<inline-formula><mml:math id="M168" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M169" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>, (SA)<inline-formula><mml:math id="M170" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M171" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(aldehyde)<inline-formula><mml:math id="M172" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M173" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> and (SA)<inline-formula><mml:math id="M174" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M175" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(peroxide)<inline-formula><mml:math id="M176" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M177" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> clusters also have low free energy values with <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">19.24</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">18.01</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20.86</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M182" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. Figure <xref ref-type="fig" rid="Ch1.F6"/> presents the cluster structures. Again the organics are interacting with both SA and the DMA. Interestingly, the aldehyde in the (SA)<inline-formula><mml:math id="M183" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M184" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(aldehyde)<inline-formula><mml:math id="M185" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M186" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster preferentially binds to the SA and DMA compounds via several weak interactions, instead of binding to the vacant S–OH group in SA. We found that the cluster where the aldehyde resides at the S–OH group in SA is <inline-formula><mml:math id="M187" display="inline"><mml:mn mathvariant="normal">0.62</mml:mn></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M188" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> higher in free than the presented structure in Fig. <xref ref-type="fig" rid="Ch1.F5"/> (see Supplement). Thus, the ability to form clusters with organic molecules including multiple alcohols, aldehydes or peroxides as functional groups should be further studied in the future.</p>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><?xmltex \opttitle{(SA)${}_{{1-2}}$(base)${}_{{1-2}}$(CA)${}_{3}$ clusters}?><title>(SA)<inline-formula><mml:math id="M189" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M190" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M191" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> clusters</title>
      <p id="d1e2945">As the carboxylic acid groups consistently lead to the most stable clusters, the (SA)<inline-formula><mml:math id="M192" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M193" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M194" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> clusters have also been studied. The calculated binding free energies, at 298.15 K and 1 atm, are given in Fig. <xref ref-type="fig" rid="Ch1.F7"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e2989">The binding free energy of the <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mtext>1-2</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mtext>base</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>CA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> clusters, calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M196" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M197" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M198" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. Carboxylic acid has been omitted in the labels for readability.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f07.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e3062">The (SA)<inline-formula><mml:math id="M199" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M200" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M201" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> cluster geometries lowest in free energy. Calculated at the DLPNO-CCSD(T<inline-formula><mml:math id="M202" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:math></inline-formula>)/aug-cc-pVTZ//<inline-formula><mml:math id="M203" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula>B97X-D/6-31++G(d,p) level of theory with quasi-harmonic cutoff of 100 cm<inline-formula><mml:math id="M204" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, at 298.15 K and 1 atm. White – hydrogen, brown – carbon, red – oxygen, yellow – sulfur, blue – nitrogen.  CA is short for carboxylic acid.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f08.png"/>

        </fig>

      <p id="d1e3137">Logically, the inclusion of three carboxylic acid groups has a stabilizing effect, just as the inclusion of more SA and base does. Following the trend from earlier of DMA producing the most stable clusters, (SA)<inline-formula><mml:math id="M205" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M206" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M207" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> is the most stable cluster with <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">56.27</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M209" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Furthermore, DMA is found as a component in the three clusters that are lowest in free energy, with (SA)<inline-formula><mml:math id="M210" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(MA)<inline-formula><mml:math id="M211" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M212" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M213" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> having <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">55.16</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M215" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and (SA)<inline-formula><mml:math id="M216" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M217" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(TMA)<inline-formula><mml:math id="M218" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M219" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> having <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">52.89</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M221" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. AM, on the other hand, is again the base that produces the clusters with the highest free energy, both alone and in combination with other bases. The two clusters highest in free energy are (SA)<inline-formula><mml:math id="M222" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(AM)<inline-formula><mml:math id="M223" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M224" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> with <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">21.40</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M226" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and (SA)<inline-formula><mml:math id="M227" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(AM)<inline-formula><mml:math id="M228" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M229" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> with <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">20.07</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M231" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Two SA molecules lead to more stable clusters than two DMA molecules, as (SA)<inline-formula><mml:math id="M232" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M233" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M234" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> has a slightly lower free energy compared to (SA)<inline-formula><mml:math id="M235" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M236" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(CA)<inline-formula><mml:math id="M237" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:math></inline-formula> with a <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> of <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">36.92</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">35.59</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M241" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. While this is consistent with previous studies <xref ref-type="bibr" rid="bib1.bibx59 bib1.bibx12" id="paren.49"/>, we see that the inclusion of the organic acids decreases the difference between the two paths. The clusters lowest in free energy all have two SA molecules and two bases, as the<?pagebreak page129?> inclusion of more SA and base gives rise to more acid–base interactions, as is illustrated in Fig. <xref ref-type="fig" rid="Ch1.F8"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e3542">Simulated cluster formation potentials (in clusters cm<inline-formula><mml:math id="M242" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M243" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>) as a function of oxygenated organic molecule mixing ratio, in the lower concentration limit <bold>(a)</bold> and upper concentration limit <bold>(b)</bold>. The simulations are performed at 278.15 K and 1 atm.</p></caption>
          <?xmltex \igopts{width=355.659449pt}?><graphic xlink:href="https://ar.copernicus.org/articles/2/123/2024/ar-2-123-2024-f09.png"/>

        </fig>

      <p id="d1e3581">While the clusters become lower in free energy as they increase in size, it is not a guarantee that they are stable against evaporation in the atmosphere. For instance, the subsequent addition of more carboxylic acid groups to the (SA)<inline-formula><mml:math id="M244" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M245" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster leads to a decrease of <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8.04</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4.54</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3.13</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M249" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the first, second and third addition, respectively. Hence, if these are treated as individual molecules it is unlikely that they form stable clusters at realistic atmospheric conditions. However, if all three functional groups are treated as single OOM, the free energy for adding a hypothetical idealized tricarboxylic to the (SA)<inline-formula><mml:math id="M250" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(DMA)<inline-formula><mml:math id="M251" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> cluster is <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">15.71</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M253" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. It should be noted that this approach neglects the loss of high-entropy translation-and-rotation degrees of freedom (see discussion in Sect. <xref ref-type="sec" rid="Ch1.S2.SS3"/>). A pragmatic approach to remedy this effect would be to model the single OOM as a cluster of the three carboxylic acid groups. Essentially, we want to compare the following two reactions:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M254" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E3"><mml:mtd><mml:mtext>3</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><?xmltex \hack{\hbox\bgroup\fontsize{9}{9}\selectfont$\displaystyle}?><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>DMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:mtext>HCOOH</mml:mtext><mml:mo>⟶</mml:mo><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>DMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>HCOOH</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msub><?xmltex \hack{$\egroup}?></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E4"><mml:mtd><mml:mtext>4</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><?xmltex \hack{\hbox\bgroup\fontsize{9}{9}\selectfont$\displaystyle}?><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>DMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mtext>(HCOOH)</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>⟶</mml:mo><mml:mo>(</mml:mo><mml:mtext>SA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>DMA</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mtext>HCOOH</mml:mtext><mml:msub><mml:mo>)</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>.</mml:mo><?xmltex \hack{$\egroup}?></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            Calculating the binding free energy difference between Reactions (3) and (4) we obtain
            <disp-formula id="Ch1.E5" content-type="numbered"><label>5</label><mml:math id="M255" display="block"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo mathsize="1.5em">[</mml:mo><mml:msub><mml:mtext>(HCOOH)</mml:mtext><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo mathsize="1.5em">]</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi><mml:mo mathsize="1.5em">[</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:mtext>HCOOH</mml:mtext><mml:mo mathsize="1.5em">]</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          Computing this value at 298.15 K and 1 atm leads to a perfect cancellation of errors with a <inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> value of <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.06</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M258" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. However, as the enthalpy and entropy terms are different for Reaction (3) and (4), we can expect a different temperature dependence. Recalculating <inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>G</mml:mi></mml:mrow></mml:math></inline-formula> at 278.15 K and 1 atm leads to a <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1.5</mml:mn></mml:mrow></mml:math></inline-formula> kcal mol<inline-formula><mml:math id="M261" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> difference. Hence, there is very little difference between the two methods of calculating the binding free energies, and we will in the following stick to the simple method given by Reaction (3). Nevertheless, this is a very strong binding and would correspond to a quite stable cluster. Hence, by employing the “cluster-of-functional-groups” approach we have identified that tricarboxylic acids are likely candidates for forming stable clusters with SA and bases. This conclusion was already hypothesized but not explicitly proven in our earlier work <xref ref-type="bibr" rid="bib1.bibx21" id="paren.50"/>.</p>
</sec>
<sec id="Ch1.S3.SS5">
  <label>3.5</label><title>Cluster formation potentials</title>
      <p id="d1e3958">Based on the calculated thermochemistry in the previous sections, we can study how a hypothetical OOM composed of three carboxyl groups can potentially stabilize sulfuric<?pagebreak page130?> acid–base clusters. Letting the three carboxyl groups represent a single OOM, we simulated the cluster formation potential (<inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mtext>potential</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) of the (SA)<inline-formula><mml:math id="M263" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(base)<inline-formula><mml:math id="M264" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>(OOM)<inline-formula><mml:math id="M265" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> systems, with base <inline-formula><mml:math id="M266" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> AM, MA, DMA and TMA. We calculated the collision coefficient of the OOM in the ACDC simulations based on the liquid density for formic acid and 3 times the mass of formic acid. To allow direct comparability, we conformed with our previous studies and used the same vapor concentrations as in the <italic>Clusteromics</italic> series of papers <xref ref-type="bibr" rid="bib1.bibx15 bib1.bibx16 bib1.bibx17 bib1.bibx40 bib1.bibx2" id="paren.51"/>. Sulfuric acid was fixed at <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> molecules cm<inline-formula><mml:math id="M268" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and the  concentration of the bases was studied giving two extremes with a “lower limit” and an “upper limit”. These were set as follows: AM (10, 10 ppb), MA (1, 100 ppt) and DMA/TMA (1, 10 ppt). It should be noted that the low concentration limit likely best represents the actual concentrations observed in the ambient atmosphere.</p>
      <p id="d1e4046">The simulations were performed at 278.15 K and 1 atm using the settings described in Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>. Figure <xref ref-type="fig" rid="Ch1.F9"/> presents the simulated cluster formation potentials (<inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mtext>potential</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>) for the four bases as a function of OOM concentration (0–10 ppt).</p>
      <p id="d1e4064">It is seen that the influence of the added OOM is highly dependent on the base in the SA–base–OOM systems. In the lower concentration limit the <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mtext>potential</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> value increases around 1 order of magnitude with 10 ppt OOM present for MA and DMA. This is roughly 4 orders of magnitude for the SA–AM–OOM systems. However, the increase is from <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.49</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mn mathvariant="normal">9.59</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> cm<inline-formula><mml:math id="M273" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M274" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, implying that the absolute cluster formation potential is still negligible. The cluster formation potential of the SA–TMA–OOM system is found to be more or less unaffected by the presence of the OOM and thereby does not increase much with increased OOM concentration. This is caused by the three bulky methyl groups in TMA, which impede the attachment of the OOM due to steric hindrance (See Supplement). The formation potentials present the following trend at 10 ppt of OOM: DMA <inline-formula><mml:math id="M275" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> TMA <inline-formula><mml:math id="M276" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> MA <inline-formula><mml:math id="M277" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> AM. In the upper concentration limit we see very similar trends, except that the SA–AM–OOM system begins to overtake the SA–MA–OOM system, due to the very high mixing ratio of 10 ppb of AM.</p>
      <p id="d1e4160">Inspecting the fluxes out of the systems, in the low concentration regime, shows that the OOM (at 1 ppt) contributes to 97.96 %, 98.86 %, 72.44 % and 7.52 % of the outgrowing fluxes for the AM, MA, DMA and TMA systems, respectively. The fluxes for each system at various concentrations can be seen in the Supplement. Hence, the more weakly bound the SA–base system is without the OOM present, the more the OOM will contribute to the cluster formation potential. At 10 ppt of OOM 100 % of the outgrowing clusters contain an OOM for AM, MA and DMA, both in the lower and upper concentration regime of the bases. At 10 ppt of OOM the outgrowing clusters containing an OOM for TMA are 78.97 % and 87.22 % in the lower and upper concentration limits. Again, it should be noted that the simulated <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mtext>potential</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> values show the potential to grow to larger sizes and not the actual nucleation rate. Hence, whether the OOM will evaporate from larger clusters or further contribute to the cluster growth remains unknown.</p>
      <?pagebreak page131?><p id="d1e4175">Overall, we see that the hypothetical OOM substantially contributes to the cluster formation potential, but as this is an idealized compound, explicit SA–base–tricarboxylic acid clusters should be further studied. Cluster formation with 3-methyl-1,2,3-butanecarboxylic acid (MBTCA) <xref ref-type="bibr" rid="bib1.bibx51" id="paren.52"/> has previously been carried out for SA–MBTCA clusters <xref ref-type="bibr" rid="bib1.bibx60 bib1.bibx22" id="paren.53"/> and SA–AM–MBTCA clusters <xref ref-type="bibr" rid="bib1.bibx53" id="paren.54"/>, but it remains ambiguous whether MBTCA is important for cluster formation. Recent evidence has suggested that SA–MBTCA clusters primarily grow along the MBTCA coordinate, i.e., without the participation of SA <xref ref-type="bibr" rid="bib1.bibx14" id="paren.55"/>. Other potential atmospheric relevant tricarboxylic acids could be the 3-carboxyheptanoic acid (CHA) compound identified from limonene oxidation <xref ref-type="bibr" rid="bib1.bibx30 bib1.bibx75" id="paren.56"/>. Recent work indicates that CHA might be involved in SA–CHA cluster formation <xref ref-type="bibr" rid="bib1.bibx71" id="paren.57"/>, and it would be worth to explicitly study SA–base–CHA clusters further. Finally, there has been identified a large accretion product, known as pinyl diaterpenylic ester (PDPE), from <inline-formula><mml:math id="M279" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula>-pinene oxidation <xref ref-type="bibr" rid="bib1.bibx42" id="paren.58"/>. Such a large compound has never been studied in atmospheric cluster formation and would be worth investigating in the future. This is also aligned with experimental observations that deem large accretion products as the most likely OOMs to drive nucleation <xref ref-type="bibr" rid="bib1.bibx47 bib1.bibx8" id="paren.59"/>.</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <label>4</label><title>Conclusions</title>
      <p id="d1e4219">Using quantum chemical calculations we have employed a new method, denoted the “cluster-of-functional-groups” approach, for studying the role of oxygenated organic molecules (OOMs) in organic enhanced atmospheric cluster formation. Studying all combinations of organic donor and acceptor functional groups and their intermolecular interactions with sulfuric acid–base clusters, it is found that carboxyl groups lead to the most stable clusters. Based on our findings, we study the cluster formation potential of a hypothetical tricarboxylic acid molecule, represented as a cluster of three carboxyl groups. We find that the proxy OOMs composed of three carboxylic acid groups are present almost in all the relevant outgrowing clusters. Thereby the OOM is directly participating in SA–base–OOM cluster formation. Hence, the role of explicit tricarboxylic acids should be further studied, and especially large flexible tricarboxylic acid accretion products might be important for cluster formation.</p>
      <p id="d1e4222">We hypothesize that a “cluster-of-functionals-groups” approach composed of multiple carbonyls, alcohols and hydroperoxide groups might rival the binding strength of three carboxylic acids in SA–base clustering and should be further studied in the future. The approach should also be extended to study ion-induced nucleation, which might substantially enhance pure organic nucleation. In addition, the effect of temperature should be investigated, as all the functional groups will bind more strongly at lower temperatures.</p>
      <p id="d1e4225">Overall, our presented “cluster-of-functional-groups” approach is general and applicable to other topics where multifunctional compounds are important and where the exact chemical structure remains unknown. Hence, we speculate that the work could also be extended to study the potential molecular structures that can enhance ice nucleation in the form of identifying potential functional groups that facilitate the formation of hexagonal ice <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mtext>h</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> structures.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e4244">All the calculated structures and thermochemistry are available in the Atmospheric Cluster Database (ACDB) at <ext-link xlink:href="https://doi.org/10.5281/zenodo.11422835" ext-link-type="DOI">10.5281/zenodo.11422835</ext-link> <xref ref-type="bibr" rid="bib1.bibx19" id="paren.60"/>.</p>
  </notes><app-group>
        <supplementary-material position="anchor"><p id="d1e4253">The supplement related to this article is available online at: <inline-supplementary-material xlink:href="https://doi.org/10.5194/ar-2-123-2024-supplement" xlink:title="pdf">https://doi.org/10.5194/ar-2-123-2024-supplement</inline-supplementary-material>.</p></supplementary-material>
        </app-group><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e4262">Conceptualization: JE;  methodology: ANP, YK, JE; formal analysis: ANP, YK; investigation: ANP, YK; resources: JE; writing – original draft: ANP, JE; writing – review and editing: ANP, YK, JE; visualization: ANP, YK; project administration: JE; funding acquisition: JE; supervision: JE.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e4268">At least one of the (co-)authors is a member of the editorial board of <italic>Aerosol Research</italic>. The peer-review process was guided by an independent editor, and the authors also have no other competing interests to declare.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e4277">Publisher’s note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. While Copernicus Publications makes every effort to include appropriate place names, the final responsibility lies with the authors.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e4283">The numerical results presented in this work were obtained at the Centre for Scientific Computing, Aarhus <uri>https://phys.au.dk/forskning/faciliteter/cscaa/</uri> (last access: 4 June 2024).</p><p id="d1e4288">The authors thank Professor Merete Bilde for insightful discussions of the present work.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e4293">This research has been supported by the Independent Research Fund Denmark (grant no. 9064-00001B). This work was funded by the Danish National Research Foundation (DNRF172) through the Center of Excellence for Chemistry of Clouds.</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e4299">This paper was edited by Eirini Goudeli and reviewed by Theo Kurtén and one anonymous referee.</p>
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